Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs2018347 chr11:12093458 G/A 8.04E-5 488 31.37 32.87 25.72 KM Plot
THCA rs202223790 chr10:104731019 GA/G 0.000127 481 31.43 32.9 32.1 KM Plot
THCA rs2024859 chr1:41562285 T/G 1.2E-7 502 27.33 30.48 31.92 KM Plot
THCA rs2024860 chr1:41562243 C/T 1.2E-7 502 27.33 30.43 31.93 KM Plot
THCA rs2049364 chr3:97038428 C/T 1.51E-5 500 31.4 33.87 26.47 KM Plot
THCA rs2051043 chr10:43479935 G/T 0 503 31.7 30.38 9.82 KM Plot
THCA rs2060968 chr8:144603486 G/C 7.14E-6 486 31.73 30.27 26.32 KM Plot
THCA rs2064740 chr1:41514150 C/G 1.22E-7 501 27.33 30.48 31.93 KM Plot
THCA rs2073073 chr20:47269537 A/G 9.99E-16 503 31.68 31.15 5.8 KM Plot
THCA rs2108825 chr19:2136515 T/C 0.000132 491 32.03 31.68 31.45 KM Plot
THCA rs213731 chr1:41578198 A/T 1.6E-7 502 27.1 30.53 31.92 KM Plot
THCA rs213732 chr1:41578114 C/T 7.98E-6 502 27.33 30.53 31.87 KM Plot
THCA rs213749 chr1:41613890 C/A 7.2E-5 501 27.57 30.53 31.9 KM Plot
THCA rs213750 chr1:41610814 A/T 7.2E-5 501 27.57 30.53 31.9 KM Plot
THCA rs213753 chr1:41607331 A/G 1.2E-7 502 27.33 30.53 31.9 KM Plot